Corona Virus (COVID-19) Datasets
Name
Date
Description
License
Subjects
Quantity
Data
Target
Reference
Download
Virus assays for SARS-CoV-2
2020
Pros and cons of common molecular diagnostics in UP
1
55
xlsx
Medical and Health Sciences
Extended data for 2019-nCoV
2020
The data in this dataset support the findings in the paper entitled "Genomic and protein structure modelling analysis depicts the origin and pathogenicity of 2019-nCoV, a new coronavirus which caused a pneumonia outbreak in Wuhan, China".
1
49
xlsx
Medical and Health Sciences
The spike glycoprotein properties
2020
The glycan shield and structure prediction of spike glycoprotein and its interaction with human CD26.
3
50
images and docx
Medical and Health Sciences
2019-nCoV Comparative model
2020
Comparative model of novel coronavirus 2019-nCoV protease Mpro.
1
4
png, pse
Medical and Health Sciences
Dimensions COVID-19 publications, datasets and clinical trials
2020
This file contains all relevant publications, datasets and clinical trials from Dimensions that are related to COVID-19.
3
150
xlsx
Medical and Health Sciences
PRISMA Scoping Review
2020
PRISMA Scoping Review checklist for a research note, "Lithium: a potential treatment for the novel Wuhan (2019-nCoV) coronavirus?", submitted by J.K. Nowak and J. Walkowiak to F1000Research.
1
1
pdf
Medical and Health Sciences
implication of multiple shedding routes
2020
Molecular and serological investigation of 2019-nCoV infected patients: implication of multiple shedding routes.
1
15
xlsx
Medical and Health Sciences
Suitability Map of COVID-19 Virus Spread
2020
This image reports a Maximum Entropy model that estimates suitable locations for COVID-19 spread, i.e. places that could favour the spread of the virus just in terms of environmental parameters. The model was trained just on locations in Italy that have reported a rate of new infections higher than the geometric mean of all Italian infection rates.
1
8
png,asc
Medical and Health Sciences
Phosphoprotoemics for SARS COV 2 infected vero cells
2020
Vero cells infected with SARS CoV 2 at Bristol University March 2020 this phospho preoteome is matched with fastq data and a total proteome.
2
5 GB
raw
Medical and Health Sciences
Emerging novel coronavirus (2019-nCoV)
2020
Current scenario, evolutionary perspective based on genome analysis and recent developments.
2
49
xlsx
Medical and Health Sciences
Molecular dynamics simulations of coronavirus 2019-nCoV
2020
Molecular dynamics simulations (500 ps MD at 310 K) of comparative model of novel coronavirus 2019-nCoV protease Mpro in complex with the covalently bound ligands G75 and G82. The starting position of the ligands has been respectively taken from 3SZN and 3TIU PDB structures. The archives contain also an heatmap representing the protein-ligand contact frequencies. Green-boxed occurrences in the heatmap represent hydrogen bond formation during the simulation.
2
3.36 GB
pdb,png,gro,xtc
Medical and Health Sciences
Identification Sus scrofaand Mus musculus
2020
The information of genomic sequence as compared with SARS-CoV-2.
1
37
docx
Medical and Health Sciences
A rebuttal to the claim of formation via laboratory recombination
2020
Is SARS-CoV-2 originated from laboratory? A rebuttal to the claim of formation via laboratory recombination.
1
1
docx
Medical and Health Sciences
6 molecular dynamics simulations of coronavirus 2019-nCoV protease model
2020
Molecular dynamics simulations of comparative model of novel coronavirus 2019-nCoV protease Mpro in complex with 6 different conformations based on the Catalophore point-cloud alignment and (re)- docking of lopinavir into the 2019ncov virus protease model.
1
6 GB
zip
Medical and Health Sciences
REFERENCES:
[0] Jing-Wen Ai, Yi Zhang, Hao-Cheng Zhang, Teng Xu, Wen-Hong Zhang. "Era of molecular diagnosis for pathogen identification of unexplained pneumonia, lessons to be learned." Taylor and Francis Group, 
, 2020.
[1] Ning Dong, Xuemei Yang, Lianwei Ye, Chen Kaichao. "Genomic and protein structure modelling analysis depicts the origin and pathogenicity of 2019-nCoV, a new coronavirus which caused a pneumonia outbreak in Wuhan, China." F1000Research, , 2020.
[2] Vankadari N, Wilce JA. "Emerging WuHan (COVID-19) coronavirus: glycan shield and structure prediction of spike glycoprotein and its interaction with human CD26." Emerg Microbes Infect, pp. 601-604, 2020.
[3] Gruber, Christian C., Steinkellner, Georg. "Comparative model of novel coronavirus 2019-nCoV protease Mpro. figshare. Dataset." , 2020.
[4] Dimensions Resources , 2020.
[5] Nowak, Jan Krzysztof, Walkowiak, Jaroslaw."Lithium: a potential treatment for the novel Wuhan (2019-nCoV) coronavirus?" F1000Research , 2020.
[6] Wei Zhang Rong-Hui Du Bei Li Xiao-Shuang Zheng Xing-Lou Yang Ben Hu Yan-Yi Wang Geng-Fu Xiao Bing Yan Zheng-Li Shi Peng Zhou."Molecular and serological investigation of 2019-nCoV infected patients: implication of multiple shedding routes" Emerging Microbes and Infections, 9, 1 , 2020.
[7] Gianpaolo Coro. zenodo , 2020.
[8] David Matthews. zenodo , 2020.
[9] Yashpal Singh Malik, Shubhankar Sircar, Sudipta Bhat, Khan Sharun, Kuldeep Dhama, Maryam Dadar, Ruchi Tiwari, Wanpen Chaicumpa. "Emerging novel coronavirus (2019-nCoV)—current scenario, evolutionary perspective based on genome analysis and recent developments" Taylor and Francis Group , 2020.
[10] Marco Cespugli, Vedat Durmaz, Georg Steinkellner, Christian C. Gruber. "Molecular dynamics simulations of coronavirus 2019-nCoV protease model in complex with G75 and G82 ligands (covalently bound)" figshare , 2020.
[11] Xiaopeng Hu. "Identification Sus scrofaand Mus musculus as potential parasitifersof SARS-CoV-2 via phylogenetic and homologous recombination analysis". Figshare , 2020.
[12] Pei Hao, Wu Zhong, Shiyang Song, Shiyong Fan, Xuan Li. "Is SARS-CoV-2 originated from laboratory? A rebuttal to the claim of formation via laboratory recombination". Figshare , 2020.
[13] Marco Cespugli, Vedat Durmaz, Georg Steinkellner, Christian C. Gruber. "6 molecular dynamics simulations of coronavirus 2019-nCoV protease model in complex with different conformations of lopinavir." Figshare , 2020.
